Variant report

Variant	rs9535535
Chromosome Location	chr13:51513533-51513534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51483947..51485483-chr13:51513505..51515717,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233672	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2038718	0.98[ASN][1000 genomes]
rs4941678	0.90[ASN][1000 genomes]
rs6561602	0.82[ASN][1000 genomes]
rs6561603	0.92[ASN][1000 genomes]
rs730076	0.97[ASN][1000 genomes]
rs7316955	0.92[ASN][1000 genomes]
rs7317618	0.95[ASN][1000 genomes]
rs7319356	0.81[ASN][1000 genomes]
rs7321027	0.92[ASN][1000 genomes]
rs7324232	0.82[ASN][1000 genomes]
rs7329171	0.95[ASN][1000 genomes]
rs7335206	0.98[ASN][1000 genomes]
rs9316512	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51486600-51528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
3	chr13:51496600-51529800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51496800-51533200	Weak transcription	NH-A	brain
5	chr13:51501800-51525000	Weak transcription	Brain Substantia Nigra	brain
6	chr13:51502400-51530800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr13:51502400-51531200	Weak transcription	NHLF	lung
8	chr13:51503000-51531600	Strong transcription	Primary B cells from peripheral blood	blood
9	chr13:51503000-51538200	Weak transcription	HMEC	breast
10	chr13:51503200-51520800	Weak transcription	HSMMtube	muscle
11	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
12	chr13:51503400-51514000	Strong transcription	Thymus	Thymus
13	chr13:51503400-51528200	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr13:51503400-51531600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr13:51503600-51528400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr13:51503600-51551800	Strong transcription	Dnd41	blood
17	chr13:51503800-51518600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
19	chr13:51505800-51527200	Weak transcription	Hela-S3	cervix
20	chr13:51506200-51525800	Weak transcription	HUVEC	blood vessel
21	chr13:51506600-51538600	Weak transcription	K562	blood
22	chr13:51507600-51514800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr13:51508600-51527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:51509400-51515600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr13:51509400-51541400	Weak transcription	A549	lung
26	chr13:51509600-51519200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr13:51509600-51521000	Weak transcription	Aorta	Aorta
28	chr13:51509600-51523400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr13:51509600-51538800	Weak transcription	Right Ventricle	heart
30	chr13:51509600-51542400	Weak transcription	NHEK	skin
31	chr13:51509800-51515800	Weak transcription	Gastric	stomach
32	chr13:51509800-51522800	Weak transcription	Colon Smooth Muscle	Colon
33	chr13:51509800-51527600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:51509800-51529600	Weak transcription	Brain Angular Gyrus	brain
35	chr13:51509800-51543200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr13:51509800-51550200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr13:51510000-51516000	Weak transcription	Placenta	Placenta
38	chr13:51510000-51520400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr13:51510000-51522600	Weak transcription	HSMM	muscle
40	chr13:51510000-51539600	Weak transcription	Fetal Heart	heart
41	chr13:51510000-51545400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr13:51510200-51516200	Weak transcription	Left Ventricle	heart
43	chr13:51510200-51518000	Weak transcription	Esophagus	oesophagus
44	chr13:51510200-51524800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr13:51510200-51525400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr13:51510200-51526400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr13:51510200-51543800	Weak transcription	Pancreas	Pancrea
48	chr13:51510200-51545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr13:51510200-51546200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr13:51510400-51514200	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links