Variant report

Variant	rs6571904
Chromosome Location	chr14:39678952-39678953
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10133338	0.88[AMR][1000 genomes]
rs11157046	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11157047	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11157048	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs175341	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1956629	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2082637	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2099410	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2180792	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2252040	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2415538	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4290398	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4616209	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4902402	0.83[ASN][1000 genomes]
rs4902419	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6571896	0.83[ASN][1000 genomes]
rs6571905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147760	0.83[ASN][1000 genomes]
rs761804	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs761806	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs761807	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8003485	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8003807	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8010111	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8011855	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8014255	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8014677	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8022141	0.83[AMR][1000 genomes]
rs9322993	0.83[ASN][1000 genomes]
rs9671927	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv974270	chr14:39664152-39680061	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39679400	Weak transcription	Hela-S3	cervix
2	chr14:39674000-39679800	Weak transcription	A549	lung
3	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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