Variant report

Variant	rs11157046
Chromosome Location	chr14:39598967-39598968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10132034	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10132953	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10149829	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11157047	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11157048	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12434607	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12895329	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs175341	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950509	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1955917	0.94[EUR][1000 genomes]
rs1956629	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1964842	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2038357	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2082637	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2099410	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2180214	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2180217	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2180792	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252040	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415531	0.83[EUR][1000 genomes]
rs3899404	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4290398	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4616209	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899139	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4899140	0.94[EUR][1000 genomes]
rs4902294	0.94[EUR][1000 genomes]
rs4902402	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902436	0.81[AMR][1000 genomes]
rs56163817	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6571888	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6571889	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6571890	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6571891	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6571894	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6571895	0.86[AMR][1000 genomes]
rs6571896	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571897	0.85[ASN][1000 genomes]
rs6571904	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6571905	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7140561	1.00[CEU][hapmap]
rs7147760	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154585	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs761804	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761806	1.00[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761807	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003194	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8003485	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003807	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8007063	0.89[AMR][1000 genomes]
rs8010111	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011855	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012178	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs8014255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014677	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021225	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8022141	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9322993	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9671927	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970623	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs975591	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39583800-39626000	Weak transcription	Spleen	Spleen
2	chr14:39584000-39615000	Weak transcription	Pancreas	Pancrea
3	chr14:39584000-39623600	Weak transcription	Esophagus	oesophagus
4	chr14:39584200-39610800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:39584200-39636000	Weak transcription	Small Intestine	intestine
6	chr14:39584200-39638600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:39584400-39617200	Weak transcription	Psoas Muscle	Psoas
8	chr14:39584400-39620800	Weak transcription	Colonic Mucosa	Colon
9	chr14:39584400-39626600	Weak transcription	Aorta	Aorta
10	chr14:39584600-39603600	Weak transcription	K562	blood
11	chr14:39584600-39604600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:39584600-39609600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:39584600-39625800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:39585200-39608200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:39585800-39608200	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:39586000-39608000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:39586000-39608400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:39586000-39608600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:39586000-39608800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:39586600-39599800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:39586600-39610600	Strong transcription	HepG2	liver
22	chr14:39586800-39599400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr14:39587200-39609600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:39587400-39608400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr14:39587600-39607800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr14:39588000-39602000	Strong transcription	Fetal Muscle Leg	muscle
27	chr14:39588600-39635400	Weak transcription	Fetal Brain Male	brain
28	chr14:39589200-39604800	Weak transcription	HSMMtube	muscle
29	chr14:39589200-39609200	Weak transcription	Gastric	stomach
30	chr14:39589200-39610000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr14:39589200-39618000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:39589200-39626400	Weak transcription	Fetal Heart	heart
33	chr14:39589600-39603000	Weak transcription	NHEK	skin
34	chr14:39591200-39603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:39591800-39606600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:39592000-39599200	Strong transcription	Fetal Muscle Trunk	muscle
37	chr14:39592400-39603600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr14:39592600-39603000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr14:39592600-39603800	Weak transcription	NHDF-Ad	bronchial
40	chr14:39592600-39605200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr14:39592600-39622200	Weak transcription	Right Ventricle	heart
42	chr14:39592800-39599200	Strong transcription	Fetal Stomach	stomach
43	chr14:39592800-39603000	Weak transcription	Brain Hippocampus Middle	brain
44	chr14:39592800-39603000	Weak transcription	HUVEC	blood vessel
45	chr14:39592800-39603800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr14:39592800-39606600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr14:39592800-39607400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:39592800-39618000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr14:39592800-39626600	Weak transcription	NHLF	lung
50	chr14:39593000-39599000	Strong transcription	Fetal Intestine Small	intestine

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