Variant report

Variant	rs10132034
Chromosome Location	chr14:39554161-39554162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39552215..39554960-chr14:39566329..39568969,2	K562	blood:
2	chr14:39544544..39547535-chr14:39553591..39556378,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10132953	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10149829	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11157046	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11157047	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11157048	0.86[AMR][1000 genomes]
rs12434607	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12895329	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs175341	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1950509	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1955917	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1956629	0.88[AMR][1000 genomes]
rs1964842	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2038357	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2180214	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2180217	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2180792	0.88[AMR][1000 genomes]
rs2252040	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2415531	0.81[EUR][1000 genomes]
rs3899404	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4290398	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4616209	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4899139	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4899140	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902294	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902402	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4902419	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6571888	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6571889	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571890	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571891	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571894	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571895	0.93[AMR][1000 genomes]
rs6571896	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7147760	0.87[EUR][1000 genomes]
rs7154585	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7157204	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs761804	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs761806	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs761807	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8003194	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003485	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8003807	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8010111	0.88[AMR][1000 genomes]
rs8011855	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8012178	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8014021	0.80[ASN][1000 genomes]
rs8014255	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8014677	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8022141	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9322993	0.90[EUR][1000 genomes]
rs9671927	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs970623	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs975591	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39525600-39565600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr14:39526000-39557200	Strong transcription	Osteobl	bone
3	chr14:39526400-39563200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:39526800-39554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:39526800-39554200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:39526800-39566600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:39527000-39554200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:39527000-39565400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:39527600-39554200	Weak transcription	K562	blood
10	chr14:39528000-39565400	Strong transcription	Placenta	Placenta
11	chr14:39528000-39565600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr14:39528600-39566400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:39529200-39559400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr14:39529200-39566600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr14:39529600-39564200	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr14:39529800-39554200	Weak transcription	Fetal Brain Male	brain
17	chr14:39529800-39566400	Weak transcription	Fetal Heart	heart
18	chr14:39531200-39569200	Weak transcription	Stomach Mucosa	stomach
19	chr14:39532000-39565400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:39534200-39566600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr14:39534600-39566800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:39536000-39554200	Weak transcription	Pancreas	Pancrea
23	chr14:39538200-39565200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:39538200-39565200	Strong transcription	HUVEC	blood vessel
25	chr14:39538600-39566400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:39538800-39556600	Strong transcription	Adipose Nuclei	Adipose
27	chr14:39538800-39561000	Strong transcription	Fetal Muscle Leg	muscle
28	chr14:39539000-39566600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr14:39539200-39565400	Strong transcription	Duodenum Mucosa	Duodenum
30	chr14:39540400-39559800	Strong transcription	HepG2	liver
31	chr14:39540800-39559600	Strong transcription	Liver	Liver
32	chr14:39541800-39554400	Weak transcription	Psoas Muscle	Psoas
33	chr14:39542200-39554200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr14:39542200-39554200	Weak transcription	Spleen	Spleen
35	chr14:39543200-39556600	Strong transcription	HSMM	muscle
36	chr14:39543600-39554200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:39543600-39554200	Weak transcription	Brain Substantia Nigra	brain
38	chr14:39545200-39554600	Weak transcription	HMEC	breast
39	chr14:39545400-39562800	Strong transcription	GM12878-XiMat	blood
40	chr14:39546600-39556200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:39546600-39557600	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:39546600-39565400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr14:39546800-39556800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr14:39546800-39556800	Strong transcription	Primary T cells from cord blood	blood
45	chr14:39546800-39557000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr14:39547200-39557600	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr14:39549000-39560000	Strong transcription	Fetal Intestine Large	intestine
48	chr14:39549200-39555600	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr14:39549200-39556800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr14:39549200-39565400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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