Variant report

Variant	rs1956629
Chromosome Location	chr14:39654458-39654459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:39651767..39657982-chr14:39696424..39701629,5	MCF-7	breast:
2	chr14:39581109..39582848-chr14:39652631..39654902,2	K562	blood:
3	chr14:39651862..39654641-chr14:39690512..39693459,3	K562	blood:
4	chr14:39653322..39655691-chr14:39686877..39688589,2	MCF-7	breast:
5	chr14:39653320..39655243-chr14:39697631..39700198,2	MCF-7	breast:
6	chr14:39652103..39654981-chr14:39673043..39674708,2	K562	blood:
7	chr14:39650808..39656380-chr14:39733766..39738257,10	MCF-7	breast:
8	chr14:39571020..39573430-chr14:39654386..39657374,3	K562	blood:
9	chr14:39652603..39655105-chr14:39837196..39838918,2	K562	blood:
10	chr14:39653217..39654997-chr14:39768154..39769847,2	K562	blood:
11	chr14:39652053..39654773-chr14:39736732..39739387,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000150527	Chromatin interaction
ENSG00000258941	Chromatin interaction
ENSG00000258651	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000150526	Chromatin interaction
ENSG00000100934	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10132034	0.88[AMR][1000 genomes]
rs10132953	0.88[AMR][1000 genomes]
rs10149829	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11157046	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11157047	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11157048	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12434607	0.95[AMR][1000 genomes]
rs12895329	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs175341	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1950509	0.88[AMR][1000 genomes]
rs1964842	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2038357	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2082637	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099410	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2180214	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2180217	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2180792	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252040	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4290398	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4616209	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4902402	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4902419	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902436	0.81[AMR][1000 genomes]
rs56163817	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6571889	0.88[AMR][1000 genomes]
rs6571890	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6571891	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6571894	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6571895	0.86[AMR][1000 genomes]
rs6571896	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6571897	0.85[ASN][1000 genomes]
rs6571904	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6571905	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7147760	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154585	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs761804	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs761806	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs761807	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003194	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs8003485	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003807	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8007063	0.89[AMR][1000 genomes]
rs8010111	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011855	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014255	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8014677	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8021225	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8022141	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9322993	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9671927	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39645600-39655400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:39645800-39654600	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:39645800-39655200	Strong transcription	Placenta	Placenta
4	chr14:39645800-39657200	Strong transcription	HSMM	muscle
5	chr14:39646000-39654800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr14:39646000-39654800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr14:39646000-39655200	Strong transcription	HSMMtube	muscle
8	chr14:39646200-39654600	Strong transcription	Osteobl	bone
9	chr14:39646200-39654800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:39646200-39654800	Strong transcription	Fetal Brain Female	brain
11	chr14:39646200-39655000	Strong transcription	Stomach Smooth Muscle	stomach
12	chr14:39646400-39654800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:39646400-39654800	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:39646400-39654800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:39646400-39655000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:39646400-39655000	Strong transcription	HMEC	breast
17	chr14:39646400-39655200	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr14:39646400-39655200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr14:39646400-39655200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:39646400-39655400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr14:39646400-39655400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr14:39646400-39655800	Strong transcription	Fetal Thymus	thymus
23	chr14:39646600-39654600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr14:39646600-39654800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr14:39646600-39654800	Strong transcription	Adipose Nuclei	Adipose
26	chr14:39646600-39655000	Strong transcription	Rectal Mucosa Donor 29	rectum
27	chr14:39646600-39655000	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr14:39646600-39655400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:39646800-39654600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:39646800-39654600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr14:39646800-39654800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr14:39646800-39654800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr14:39646800-39655000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:39646800-39655000	Strong transcription	NH-A	brain
35	chr14:39647000-39654800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr14:39647000-39654800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr14:39647000-39654800	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr14:39647000-39654800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:39647000-39654800	Strong transcription	Brain Cingulate Gyrus	brain
40	chr14:39647000-39654800	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr14:39647000-39655000	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr14:39647000-39655400	Strong transcription	Brain Germinal Matrix	brain
43	chr14:39647800-39655000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:39647800-39658800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr14:39648800-39654800	Strong transcription	A549	lung
46	chr14:39649000-39654600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr14:39650200-39654600	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr14:39650400-39654800	Strong transcription	Liver	Liver
49	chr14:39650400-39655000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:39650600-39654800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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