Variant report

Variant	rs7154585
Chromosome Location	chr14:39580435-39580436
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39570986..39573343-chr14:39579175..39581108,3	MCF-7	breast:
2	chr14:39571044..39574449-chr14:39575206..39581914,9	K562	blood:
3	chr14:39579122..39580804-chr14:39643639..39645795,2	MCF-7	breast:
4	chr14:39576976..39580513-chr14:39638047..39641153,4	K562	blood:
5	chr14:39578856..39580963-chr14:39581859..39584324,3	K562	blood:

Variant related genes	Relation type
ENSG00000100934	Chromatin interaction
ENSG00000092208	Chromatin interaction
ENSG00000100941	Chromatin interaction
ENSG00000258651	Chromatin interaction
ENSG00000259083	Chromatin interaction
ENSG00000182400	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10132034	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10132953	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10149829	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11157046	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11157047	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11157048	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12434607	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12895329	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs175341	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1950509	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1955917	0.94[EUR][1000 genomes]
rs1956629	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1964842	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2038357	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2082637	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2180214	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2180217	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2180792	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2252040	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2415531	0.83[EUR][1000 genomes]
rs3899404	0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4290398	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4616209	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4899139	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4899140	0.94[EUR][1000 genomes]
rs4902294	0.94[EUR][1000 genomes]
rs4902402	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902419	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56163817	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6571888	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6571889	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6571890	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6571891	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6571894	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6571895	0.86[AMR][1000 genomes]
rs6571896	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7147760	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs761804	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs761806	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs761807	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8003194	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8003485	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8003807	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8007063	0.89[AMR][1000 genomes]
rs8010111	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8011855	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8012178	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs8014255	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8014677	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8021225	0.80[AMR][1000 genomes]
rs8022141	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322993	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9671927	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs970623	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs975591	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39573400-39582400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:39573400-39583000	Weak transcription	HSMM	muscle
3	chr14:39573800-39583000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:39573800-39583000	Weak transcription	Thymus	Thymus
5	chr14:39574000-39582400	Weak transcription	A549	lung
6	chr14:39574000-39582800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:39574000-39583000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:39574000-39583000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:39574000-39583000	Weak transcription	Stomach Mucosa	stomach
10	chr14:39574200-39582400	Weak transcription	Dnd41	blood
11	chr14:39574200-39583000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:39574400-39582400	Weak transcription	Hela-S3	cervix
13	chr14:39574400-39582800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:39577200-39582400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:39577200-39582800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr14:39577600-39582800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr14:39579400-39581800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:39579400-39582000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr14:39579600-39583000	Weak transcription	K562	blood
20	chr14:39579800-39583000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:39579800-39583000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr14:39580000-39582600	Weak transcription	HepG2	liver
23	chr14:39580000-39582800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:39580000-39582800	Weak transcription	GM12878-XiMat	blood
25	chr14:39580000-39583400	Weak transcription	Gastric	stomach

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