Variant report

Variant	rs2415531
Chromosome Location	chr14:39582043-39582044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39580731..39583379-chr14:39639659..39641422,2	K562	blood:
2	chr14:39576571..39578731-chr14:39581364..39582921,2	MCF-7	breast:
3	chr14:39581660..39583614-chr5:118323067..118325473,2	MCF-7	breast:
4	chr14:39581109..39582848-chr14:39652631..39654902,2	K562	blood:

Variant related genes	Relation type
ENSG00000258591	Chromatin interaction
ENSG00000182400	Chromatin interaction
ENSG00000169570	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10132034	0.81[EUR][1000 genomes]
rs10149829	0.81[EUR][1000 genomes]
rs11157046	0.83[EUR][1000 genomes]
rs12895329	0.81[EUR][1000 genomes]
rs1964842	0.81[EUR][1000 genomes]
rs2038357	0.83[EUR][1000 genomes]
rs2180217	0.81[EUR][1000 genomes]
rs4902402	0.83[EUR][1000 genomes]
rs6571890	0.81[EUR][1000 genomes]
rs6571891	0.81[EUR][1000 genomes]
rs6571894	0.81[EUR][1000 genomes]
rs6571896	0.83[EUR][1000 genomes]
rs7154585	0.83[EUR][1000 genomes]
rs8003194	0.81[EUR][1000 genomes]
rs8014255	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39573400-39582400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:39573400-39583000	Weak transcription	HSMM	muscle
3	chr14:39573800-39583000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:39573800-39583000	Weak transcription	Thymus	Thymus
5	chr14:39574000-39582400	Weak transcription	A549	lung
6	chr14:39574000-39582800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr14:39574000-39583000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:39574000-39583000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:39574000-39583000	Weak transcription	Stomach Mucosa	stomach
10	chr14:39574200-39582400	Weak transcription	Dnd41	blood
11	chr14:39574200-39583000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:39574400-39582400	Weak transcription	Hela-S3	cervix
13	chr14:39574400-39582800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:39577200-39582400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr14:39577200-39582800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr14:39577600-39582800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr14:39579600-39583000	Weak transcription	K562	blood
18	chr14:39579800-39583000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:39579800-39583000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:39580000-39582600	Weak transcription	HepG2	liver
21	chr14:39580000-39582800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr14:39580000-39582800	Weak transcription	GM12878-XiMat	blood
23	chr14:39580000-39583400	Weak transcription	Gastric	stomach
24	chr14:39581000-39582800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr14:39581800-39584200	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr14:39582000-39582400	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr14:39582000-39582800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links