Variant report

Variant	rs6574629
Chromosome Location	chr14:81592190-81592191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12586613	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2888050	0.98[ASN][1000 genomes]
rs35080161	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57548236	0.95[ASN][1000 genomes]
rs59334515	0.99[ASN][1000 genomes]
rs59395915	0.99[ASN][1000 genomes]
rs60832047	0.99[ASN][1000 genomes]
rs66996522	1.00[ASN][1000 genomes]
rs67045633	1.00[ASN][1000 genomes]
rs67915209	0.99[ASN][1000 genomes]
rs7144198	1.00[ASN][1000 genomes]
rs72691609	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72691624	0.99[ASN][1000 genomes]
rs8021423	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6574629	C14orf174	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81538200-81593000	Weak transcription	Psoas Muscle	Psoas
2	chr14:81581000-81593200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:81586800-81592200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr14:81590600-81593200	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr14:81590800-81593200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:81591400-81592200	Strong transcription	Liver	Liver
7	chr14:81591600-81592200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr14:81591800-81592200	ZNF genes & repeats	Thymus	Thymus
9	chr14:81591800-81592200	ZNF genes & repeats	GM12878-XiMat	blood
10	chr14:81591800-81592400	Strong transcription	Dnd41	blood
11	chr14:81592000-81592200	Enhancers	Primary B cells from cord blood	blood
12	chr14:81592000-81592200	Enhancers	Left Ventricle	heart
13	chr14:81592000-81592200	Enhancers	Pancreas	Pancrea
14	chr14:81592000-81592400	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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