Variant report

Variant	rs66996522
Chromosome Location	chr14:81593018-81593019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10131259	0.85[AMR][1000 genomes]
rs11159492	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12586613	0.88[ASN][1000 genomes]
rs2268476	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2284738	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2284739	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2284740	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28373271	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28559861	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2888050	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35080161	0.85[ASN][1000 genomes]
rs55993259	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56306987	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56369010	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57548236	0.95[ASN][1000 genomes]
rs59334515	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59395915	0.99[ASN][1000 genomes]
rs60832047	0.99[ASN][1000 genomes]
rs6574629	1.00[ASN][1000 genomes]
rs67045633	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67428672	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67915209	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7143719	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7144061	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7144198	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152963	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72691609	0.99[ASN][1000 genomes]
rs72691624	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8012915	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8019356	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8020969	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8021423	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052999	chr14:81468860-81599074	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv542144	chr14:81468860-81599074	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81581000-81593200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:81590600-81593200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr14:81590800-81593200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:81592200-81593400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr14:81592200-81593600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr14:81592200-81597800	Weak transcription	Liver	Liver
7	chr14:81592200-81609000	Weak transcription	Thymus	Thymus
8	chr14:81592400-81601000	Weak transcription	Dnd41	blood

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