Variant report

Variant	rs6584103
Chromosome Location	chr10:98589730-98589731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10882853	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882854	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10882857	0.84[EUR][1000 genomes]
rs2185294	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2225344	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3814162	0.84[EUR][1000 genomes]
rs4532970	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4542327	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4919056	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4919058	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4919060	0.84[EUR][1000 genomes]
rs4919061	0.84[EUR][1000 genomes]
rs6584100	0.88[EUR][1000 genomes]
rs7069290	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7080839	0.84[EUR][1000 genomes]
rs7912176	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9702665	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98586000-98590200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:98586800-98590400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr10:98587000-98590000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:98587200-98591400	Weak transcription	Left Ventricle	heart
5	chr10:98588200-98591000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr10:98588800-98590200	Enhancers	GM12878-XiMat	blood
7	chr10:98589000-98591000	Enhancers	HepG2	liver
8	chr10:98589200-98590200	Weak transcription	Fetal Intestine Small	intestine
9	chr10:98589200-98590400	Weak transcription	Fetal Intestine Large	intestine
10	chr10:98589200-98591000	Enhancers	Duodenum Mucosa	Duodenum
11	chr10:98589200-98591000	Weak transcription	HSMMtube	muscle
12	chr10:98589200-98591200	Enhancers	Primary B cells from peripheral blood	blood
13	chr10:98589400-98590000	Enhancers	K562	blood
14	chr10:98589600-98590000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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