Variant report

Variant	rs4542327
Chromosome Location	chr10:98611907-98611908
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98606102..98610299-chr10:98611284..98615817,4	MCF-7	breast:
2	chr10:98605679..98608625-chr10:98610602..98614600,4	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10399993	0.81[ASN][1000 genomes]
rs10882853	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882854	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882857	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2185294	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2225344	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814162	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4532970	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919056	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919058	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919060	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4919061	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6584100	0.84[EUR][1000 genomes]
rs6584103	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7069290	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080839	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7894160	0.81[ASN][1000 genomes]
rs7912176	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9702665	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv825532	chr10:98567434-98618034	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98593800-98624200	Weak transcription	Colonic Mucosa	Colon
2	chr10:98594200-98639400	Weak transcription	Thymus	Thymus
3	chr10:98594400-98618800	Weak transcription	Fetal Stomach	stomach
4	chr10:98596200-98616200	Weak transcription	Brain Germinal Matrix	brain
5	chr10:98596400-98613000	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:98596400-98616200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:98596600-98616000	Weak transcription	Gastric	stomach
8	chr10:98597600-98618000	Weak transcription	Dnd41	blood
9	chr10:98600200-98624000	Weak transcription	Fetal Brain Male	brain
10	chr10:98601000-98612800	Weak transcription	Psoas Muscle	Psoas
11	chr10:98602200-98621200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr10:98603000-98617200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr10:98603000-98618200	Weak transcription	Fetal Kidney	kidney
14	chr10:98603200-98612000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:98603200-98615400	Weak transcription	Spleen	Spleen
16	chr10:98603200-98616000	Weak transcription	Lung	lung
17	chr10:98603200-98617600	Weak transcription	Fetal Intestine Large	intestine
18	chr10:98603200-98618200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:98603200-98619600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:98603200-98620000	Weak transcription	Hela-S3	cervix
21	chr10:98603200-98621400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:98604600-98623400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:98604800-98612800	Weak transcription	Right Ventricle	heart
24	chr10:98604800-98614800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr10:98604800-98614800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr10:98604800-98616000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr10:98604800-98616200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:98604800-98616200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr10:98604800-98616200	Weak transcription	HUVEC	blood vessel
30	chr10:98604800-98617800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr10:98604800-98623600	Weak transcription	Fetal Brain Female	brain
32	chr10:98605000-98616800	Weak transcription	Primary T cells from cord blood	blood
33	chr10:98605200-98617000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr10:98605200-98617000	Weak transcription	K562	blood
35	chr10:98605200-98618200	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:98605200-98619600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:98606200-98613200	Weak transcription	Esophagus	oesophagus
38	chr10:98606200-98623200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr10:98606400-98616000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:98606400-98616000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:98606600-98612800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:98606800-98623600	Weak transcription	Stomach Mucosa	stomach
43	chr10:98607000-98624000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr10:98607400-98613000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr10:98607400-98616000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr10:98608000-98614800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:98608000-98617000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:98609200-98612600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:98609800-98613000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr10:98610000-98612000	Enhancers	Skeletal Muscle Female	skeletal muscle

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