Variant report

Variant	rs7894160
Chromosome Location	chr10:98750025-98750026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98749781..98752150-chr10:98752568..98754778,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10399993	0.93[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882853	0.81[ASN][1000 genomes]
rs10882854	0.93[ASW][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs10882857	0.88[ASN][1000 genomes]
rs11188985	0.84[JPT][hapmap]
rs2185294	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[MEX][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap]
rs2225344	0.81[ASN][1000 genomes]
rs3814162	0.90[ASN][1000 genomes]
rs4532970	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4542327	0.81[ASN][1000 genomes]
rs4919056	0.81[ASN][1000 genomes]
rs4919058	0.93[ASW][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs4919060	0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs4919061	0.86[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7069290	0.93[ASW][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.95[YRI][hapmap];0.81[ASN][1000 genomes]
rs7080839	0.93[ASW][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.88[MKK][hapmap];0.82[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7912176	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs9702665	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831951	chr10:98717103-98761280	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98741200-98758000	Weak transcription	K562	blood
2	chr10:98741600-98750600	Weak transcription	NHEK	skin
3	chr10:98741600-98751400	Weak transcription	Small Intestine	intestine
4	chr10:98742000-98757000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr10:98742200-98750800	Weak transcription	HMEC	breast
6	chr10:98742200-98752200	Weak transcription	Colonic Mucosa	Colon
7	chr10:98742200-98754600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:98742200-98754600	Weak transcription	Right Ventricle	heart
9	chr10:98742200-98754800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:98742200-98755000	Weak transcription	Left Ventricle	heart
11	chr10:98742400-98750200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:98742400-98750200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:98742400-98751200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:98742400-98751400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:98742400-98752400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:98742600-98750800	Weak transcription	A549	lung
17	chr10:98742600-98752600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr10:98742600-98752800	Weak transcription	Gastric	stomach
19	chr10:98742600-98755800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:98742600-98756000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:98742600-98756800	Weak transcription	Lung	lung
22	chr10:98743000-98758600	Weak transcription	Spleen	Spleen
23	chr10:98743600-98750400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:98743600-98750400	Weak transcription	Fetal Intestine Large	intestine
25	chr10:98743800-98758000	Weak transcription	Fetal Brain Female	brain
26	chr10:98744400-98752200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:98744600-98750400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:98744600-98751000	Weak transcription	Fetal Intestine Small	intestine
29	chr10:98745000-98758400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:98745200-98756000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:98745200-98760400	Weak transcription	Primary T cells from cord blood	blood
32	chr10:98745400-98750200	Weak transcription	GM12878-XiMat	blood
33	chr10:98745400-98751400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr10:98745400-98752200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:98745400-98755600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:98745400-98756600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:98745400-98757600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:98746000-98750600	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:98746400-98752200	Weak transcription	Thymus	Thymus
40	chr10:98746400-98752600	Weak transcription	Brain Hippocampus Middle	brain
41	chr10:98746400-98755000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr10:98746400-98755600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr10:98746400-98758600	Weak transcription	Esophagus	oesophagus
44	chr10:98746600-98752000	Weak transcription	Fetal Thymus	thymus
45	chr10:98746600-98752200	Weak transcription	Primary B cells from peripheral blood	blood
46	chr10:98746600-98755000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:98747200-98752200	Weak transcription	Pancreas	Pancrea
48	chr10:98747600-98751800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:98747800-98752200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:98748000-98751400	Weak transcription	Placenta	Placenta

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