Variant report

Variant	rs7912176
Chromosome Location	chr10:98651681-98651682
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98590611..98593195-chr10:98649366..98652227,3	MCF-7	breast:
2	chr10:98650808..98652421-chr10:98656087..98657698,2	K562	blood:

Variant related genes	Relation type
ENSG00000196233	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10399993	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs10882853	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882854	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882857	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2185294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2225344	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3814162	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4532970	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4542327	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919056	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919058	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4919060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4919061	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6584100	0.81[EUR][1000 genomes]
rs6584103	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7069290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7080839	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7894160	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap]
rs9702665	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98611000-98713000	Weak transcription	Aorta	Aorta
2	chr10:98622400-98652200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:98624400-98663000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:98624800-98652200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:98624800-98656800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:98624800-98696000	Weak transcription	K562	blood
7	chr10:98633000-98656600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:98633600-98670000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:98633800-98652200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:98634600-98651800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:98636800-98683400	Weak transcription	Osteobl	bone
12	chr10:98637400-98708800	Weak transcription	NH-A	brain
13	chr10:98638800-98654200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:98639800-98714600	Weak transcription	Esophagus	oesophagus
15	chr10:98640600-98666800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:98640600-98714600	Weak transcription	Hela-S3	cervix
17	chr10:98642800-98663800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:98643600-98655000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:98644200-98652400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:98644600-98652400	Weak transcription	Psoas Muscle	Psoas
21	chr10:98644600-98658600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:98644600-98658800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:98644800-98652000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:98644800-98652200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:98644800-98663800	Weak transcription	Ovary	ovary
26	chr10:98644800-98664000	Weak transcription	NHLF	lung
27	chr10:98644800-98669800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:98644800-98674600	Weak transcription	Spleen	Spleen
29	chr10:98644800-98681400	Weak transcription	Right Ventricle	heart
30	chr10:98645000-98656400	Weak transcription	NHDF-Ad	bronchial
31	chr10:98645200-98658000	Weak transcription	Brain Angular Gyrus	brain
32	chr10:98645400-98658000	Weak transcription	Brain Substantia Nigra	brain
33	chr10:98645400-98662600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:98645400-98678000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:98646200-98652000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:98646800-98651800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr10:98646800-98651800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr10:98646800-98654600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:98649200-98652600	ZNF genes & repeats	GM12878-XiMat	blood
40	chr10:98649200-98653000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:98649400-98655000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr10:98649400-98655600	Weak transcription	Lung	lung
43	chr10:98649400-98656200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr10:98649400-98656800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:98649400-98657200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr10:98649400-98672200	Weak transcription	HSMM	muscle
47	chr10:98650000-98655400	Weak transcription	Small Intestine	intestine
48	chr10:98650000-98656200	Weak transcription	Left Ventricle	heart
49	chr10:98650000-98656400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr10:98650000-98657800	Weak transcription	Fetal Heart	heart

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