Variant report
| Variant | rs658461 |
|---|---|
| Chromosome Location | chr1:57354216-57354217 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:57343676..57345366-chr1:57354019..57355791,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10489624 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1360149 | 0.82[ASN][1000 genomes] |
| rs2145403 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2284952 | 0.84[ASN][1000 genomes] |
| rs592451 | 0.84[ASN][1000 genomes] |
| rs594105 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs607221 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs618707 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs621819 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs622300 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs645846 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs652785 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs663352 | 0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs668822 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6696924 | 0.88[ASN][1000 genomes] |
| rs6700128 | 0.84[ASN][1000 genomes] |
| rs679350 | 0.87[ASN][1000 genomes] |
| rs694090 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs880657 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869295 | chr1:56894955-57656562 | Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:57353600-57355000 | Weak transcription | Liver | Liver |
