Variant report

Variant	rs6700128
Chromosome Location	chr1:57363141-57363142
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10489624	0.88[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs1360149	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2284952	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs592451	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs594105	0.88[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs607221	0.82[ASN][1000 genomes]
rs618707	0.82[ASN][1000 genomes]
rs621819	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs645846	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs652785	0.88[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs658461	0.84[ASN][1000 genomes]
rs668822	0.81[ASN][1000 genomes]
rs6696924	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs679350	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs694090	0.90[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57360400-57364400	Enhancers	Liver	Liver
2	chr1:57361400-57364200	Enhancers	Pancreas	Pancrea
3	chr1:57362000-57363800	Enhancers	Fetal Intestine Large	intestine
4	chr1:57362000-57364600	Enhancers	Gastric	stomach
5	chr1:57362200-57365800	Enhancers	HepG2	liver
6	chr1:57362400-57363800	Weak transcription	Stomach Mucosa	stomach
7	chr1:57362400-57364000	Enhancers	Lung	lung
8	chr1:57362400-57364200	Enhancers	Fetal Intestine Small	intestine
9	chr1:57362400-57369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:57362800-57363200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:57362800-57363800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:57363000-57363800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:57363000-57363800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:57363000-57364000	Enhancers	Right Atrium	heart
15	chr1:57363000-57364000	Enhancers	NHDF-Ad	bronchial
16	chr1:57363000-57364400	Enhancers	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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