Variant report

Variant	rs679350
Chromosome Location	chr1:57364812-57364813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10489624	0.82[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1360149	0.94[ASN][1000 genomes]
rs2145403	0.81[ASN][1000 genomes]
rs2284952	0.95[ASN][1000 genomes]
rs592451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs594105	0.82[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs607221	0.85[ASN][1000 genomes]
rs618707	0.85[ASN][1000 genomes]
rs621819	0.82[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs645846	0.82[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs652785	0.82[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs658461	0.87[ASN][1000 genomes]
rs668822	0.83[ASN][1000 genomes]
rs6696924	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6700128	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs694090	0.82[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57362200-57365800	Enhancers	HepG2	liver
2	chr1:57362400-57369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:57363800-57365200	Weak transcription	Fetal Intestine Large	intestine
4	chr1:57363800-57367200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:57363800-57367400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:57364000-57365000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:57364000-57367000	Weak transcription	NHDF-Ad	bronchial
8	chr1:57364000-57367200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:57364000-57367600	Weak transcription	Hela-S3	cervix
10	chr1:57364200-57375600	Weak transcription	Pancreas	Pancrea
11	chr1:57364400-57365200	Weak transcription	Liver	Liver
12	chr1:57364600-57365200	Weak transcription	Fetal Brain Male	brain
13	chr1:57364600-57366200	Enhancers	Fetal Intestine Small	intestine
14	chr1:57364600-57370400	Weak transcription	Gastric	stomach
15	chr1:57364600-57376200	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links