Variant report

Variant	rs6589815
Chromosome Location	chr11:120433278-120433279
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11217920	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11217921	1.00[EUR][1000 genomes]
rs11217922	1.00[EUR][1000 genomes]
rs17124014	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2252227	0.81[AMR][1000 genomes]
rs2252233	0.81[AMR][1000 genomes]
rs2252373	0.81[AMR][1000 genomes]
rs60832118	0.93[AMR][1000 genomes]
rs6589816	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937796	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1051115	chr11:120376808-120446434	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1054301	chr11:120396485-120465800	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1035499	chr11:120398643-120446434	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1049494	chr11:120400115-120453381	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1052932	chr11:120406628-120442955	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120419800-120433600	Weak transcription	Right Atrium	heart
2	chr11:120424600-120433600	Weak transcription	Left Ventricle	heart
3	chr11:120426600-120433400	Weak transcription	Brain Substantia Nigra	brain
4	chr11:120426800-120433600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:120427000-120433400	Weak transcription	Brain Anterior Caudate	brain
6	chr11:120427400-120433800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:120428200-120433600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:120430200-120433400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:120431800-120434200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr11:120432600-120433600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:120432600-120434000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:120432800-120435000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:120433000-120434600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:120433000-120434600	Enhancers	Brain Hippocampus Middle	brain
15	chr11:120433000-120435200	Bivalent Enhancer	Fetal Lung	lung
16	chr11:120433200-120433400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:120433200-120434600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:120433200-120435000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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