Variant report

Variant	rs11217921
Chromosome Location	chr11:120469654-120469655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11217920	1.00[EUR][1000 genomes]
rs11217922	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17124014	1.00[EUR][1000 genomes]
rs6589815	1.00[EUR][1000 genomes]
rs6589816	1.00[EUR][1000 genomes]
rs7937796	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1036102	chr11:120442895-120498908	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120463200-120470200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:120463200-120470400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:120463400-120470200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:120463400-120470800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr11:120467800-120471400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:120468600-120470000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:120468600-120472400	Weak transcription	Fetal Brain Female	brain
8	chr11:120468600-120479400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:120468600-120479400	Weak transcription	Brain Substantia Nigra	brain
10	chr11:120468800-120469800	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:120468800-120469800	Enhancers	Ovary	ovary
12	chr11:120468800-120471000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:120468800-120471800	Enhancers	GM12878-XiMat	blood
14	chr11:120469000-120470200	Enhancers	K562	blood
15	chr11:120469000-120473000	Enhancers	Fetal Lung	lung
16	chr11:120469200-120470000	Enhancers	Brain Angular Gyrus	brain
17	chr11:120469400-120470400	Enhancers	Brain Cingulate Gyrus	brain
18	chr11:120469400-120471400	Bivalent Enhancer	Placenta	Placenta
19	chr11:120469400-120472400	Weak transcription	Fetal Kidney	kidney
20	chr11:120469600-120470000	Weak transcription	Fetal Brain Male	brain

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