Variant report

Variant	rs11217920
Chromosome Location	chr11:120460630-120460631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11217921	1.00[EUR][1000 genomes]
rs11217922	1.00[EUR][1000 genomes]
rs12282771	0.94[AMR][1000 genomes]
rs17124014	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60832118	0.87[AMR][1000 genomes]
rs6589815	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6589816	1.00[EUR][1000 genomes]
rs7937796	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1054301	chr11:120396485-120465800	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1036102	chr11:120442895-120498908	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120437200-120468000	Weak transcription	Right Atrium	heart
2	chr11:120452400-120462600	Weak transcription	Fetal Lung	lung
3	chr11:120458600-120462400	Weak transcription	Fetal Brain Female	brain
4	chr11:120458800-120462000	Weak transcription	Brain Germinal Matrix	brain
5	chr11:120459800-120461800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:120459800-120462800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:120459800-120463200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:120460200-120462000	Enhancers	Ovary	ovary
9	chr11:120460200-120462400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:120460400-120460800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:120460400-120461400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:120460400-120461600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:120460600-120460800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:120460600-120460800	Enhancers	Brain Substantia Nigra	brain
15	chr11:120460600-120460800	Enhancers	Fetal Brain Male	brain
16	chr11:120460600-120461200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr11:120460600-120461200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:120460600-120461600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:120460600-120462000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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