Variant report

Variant	rs6592055
Chromosome Location	chr11:71053385-71053386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10160764	0.82[CEU][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap]
rs10792616	0.81[EUR][1000 genomes]
rs11820362	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17348351	0.82[CEU][hapmap]
rs56670591	0.86[EUR][1000 genomes]
rs73536060	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71050600-71054600	Weak transcription	Spleen	Spleen
2	chr11:71051000-71053400	Weak transcription	HSMM	muscle
3	chr11:71051400-71054000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:71051400-71054200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:71051600-71053800	Weak transcription	NHLF	lung
6	chr11:71051600-71054400	Weak transcription	Fetal Intestine Small	intestine
7	chr11:71052000-71054400	Weak transcription	Fetal Intestine Large	intestine
8	chr11:71052800-71054400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:71053000-71054800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:71053000-71054800	Enhancers	HMEC	breast
11	chr11:71053000-71056600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:71053200-71053600	Flanking Active TSS	Hela-S3	cervix
13	chr11:71053200-71054400	Bivalent Enhancer	HepG2	liver
14	chr11:71053200-71054800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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