Variant report
| Variant | rs17348351 |
|---|---|
| Chromosome Location | chr11:71041460-71041461 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:71032558..71034348-chr11:71040273..71043123,2 | MCF-7 | breast: | |
| 2 | chr11:71033635..71035504-chr11:71041290..71043501,2 | MCF-7 | breast: | |
| 3 | chr11:71036802..71038950-chr11:71039098..71041613,2 | MCF-7 | breast: | |
| 4 | chr11:71039980..71041993-chr11:71043603..71045295,2 | MCF-7 | breast: | |
| 5 | chr11:70963535..70965827-chr11:71041163..71043231,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000162105 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs11603698 | 0.85[JPT][hapmap] |
| rs11604196 | 0.85[JPT][hapmap] |
| rs17433007 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2919736 | 0.82[JPT][hapmap] |
| rs3133512 | 1.00[JPT][hapmap] |
| rs56670591 | 0.90[EUR][1000 genomes] |
| rs59468085 | 0.97[ASN][1000 genomes] |
| rs61312608 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6592055 | 0.82[CEU][hapmap] |
| rs73536060 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048123 | chr11:70795222-71231382 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
