Variant report

Variant	rs6592643
Chromosome Location	chr11:76193197-76193198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76191502..76194293-chr11:76198687..76201522,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10751254	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10899226	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11236745	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11236754	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11236774	0.82[AFR][1000 genomes]
rs11820030	0.92[ASN][1000 genomes]
rs12271015	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12278256	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12280236	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12288653	0.92[ASN][1000 genomes]
rs12288707	0.92[ASN][1000 genomes]
rs12293666	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17134872	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17134897	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2510905	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2513507	0.82[AFR][1000 genomes]
rs2513509	0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2513519	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2513521	0.84[ASN][1000 genomes]
rs4245444	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4290257	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4421765	0.96[ASN][1000 genomes]
rs4603332	0.96[ASN][1000 genomes]
rs58576354	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6592638	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7123914	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7945459	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76177400-76195400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:76180200-76204200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:76183800-76194400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:76184400-76235000	Weak transcription	NHEK	skin
8	chr11:76184800-76202600	Weak transcription	Aorta	Aorta
9	chr11:76185000-76204000	Weak transcription	Right Ventricle	heart
10	chr11:76185400-76193400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
14	chr11:76189600-76193200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:76190000-76193800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:76190200-76193200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:76190200-76193600	Strong transcription	Placenta	Placenta
18	chr11:76190200-76193800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:76190200-76193800	ZNF genes & repeats	Brain Germinal Matrix	brain
20	chr11:76190600-76193800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:76190600-76207200	Weak transcription	Brain Substantia Nigra	brain
22	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
23	chr11:76191000-76203800	Weak transcription	Colonic Mucosa	Colon
24	chr11:76191200-76202600	Weak transcription	HepG2	liver
25	chr11:76191400-76193200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
26	chr11:76191400-76193600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:76191400-76202600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:76191400-76203200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr11:76191400-76203600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:76191400-76204000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:76191400-76204600	Weak transcription	HSMMtube	muscle
32	chr11:76191400-76204800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:76191400-76204800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr11:76191400-76205600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:76191400-76206600	Weak transcription	Fetal Brain Male	brain
36	chr11:76191400-76207000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:76191400-76211200	Weak transcription	NH-A	brain
38	chr11:76191400-76211400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:76191400-76211400	Weak transcription	Fetal Kidney	kidney
40	chr11:76191400-76211400	Weak transcription	HMEC	breast
41	chr11:76191400-76211600	Weak transcription	Fetal Heart	heart
42	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
44	chr11:76191600-76193200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:76191600-76193200	ZNF genes & repeats	Fetal Intestine Small	intestine
46	chr11:76191600-76193400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:76191600-76193400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:76191600-76199400	Weak transcription	Primary T cells from cord blood	blood
49	chr11:76191600-76201400	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:76191600-76201600	Weak transcription	Stomach Mucosa	stomach

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