Variant report

Variant	rs7945459
Chromosome Location	chr11:76195521-76195522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10751254	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899226	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236745	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11236754	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236774	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11820030	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12271015	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280236	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12288653	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12288707	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12293666	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134872	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17134897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508754	1.00[EUR][1000 genomes]
rs2510905	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513506	1.00[EUR][1000 genomes]
rs2513507	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2513509	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513510	0.81[AFR][1000 genomes]
rs2513519	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2513521	0.87[ASN][1000 genomes]
rs4245444	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4290257	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421765	1.00[ASN][1000 genomes]
rs4603332	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58576354	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592638	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592643	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7105179	1.00[EUR][1000 genomes]
rs7123914	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939908	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv3383733	chr11:76186353-76225544	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76166800-76219400	Weak transcription	Small Intestine	intestine
2	chr11:76168800-76234800	Weak transcription	Psoas Muscle	Psoas
3	chr11:76171200-76221200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:76180200-76204200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:76184400-76235000	Weak transcription	NHEK	skin
6	chr11:76184800-76202600	Weak transcription	Aorta	Aorta
7	chr11:76185000-76204000	Weak transcription	Right Ventricle	heart
8	chr11:76189000-76231400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:76189200-76211600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:76189400-76223000	Weak transcription	HUVEC	blood vessel
11	chr11:76190600-76207200	Weak transcription	Brain Substantia Nigra	brain
12	chr11:76190800-76234200	Weak transcription	Left Ventricle	heart
13	chr11:76191000-76203800	Weak transcription	Colonic Mucosa	Colon
14	chr11:76191200-76202600	Weak transcription	HepG2	liver
15	chr11:76191400-76202600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:76191400-76203200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr11:76191400-76203600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:76191400-76204000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:76191400-76204600	Weak transcription	HSMMtube	muscle
20	chr11:76191400-76204800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:76191400-76204800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:76191400-76205600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:76191400-76206600	Weak transcription	Fetal Brain Male	brain
24	chr11:76191400-76207000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:76191400-76211200	Weak transcription	NH-A	brain
26	chr11:76191400-76211400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:76191400-76211400	Weak transcription	Fetal Kidney	kidney
28	chr11:76191400-76211400	Weak transcription	HMEC	breast
29	chr11:76191400-76211600	Weak transcription	Fetal Heart	heart
30	chr11:76191400-76221200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:76191400-76239000	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:76191600-76199400	Weak transcription	Primary T cells from cord blood	blood
33	chr11:76191600-76201400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:76191600-76201600	Weak transcription	Stomach Mucosa	stomach
35	chr11:76191600-76201800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr11:76191600-76202400	Weak transcription	Brain Angular Gyrus	brain
37	chr11:76191600-76202400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr11:76191600-76202600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:76191600-76202800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:76191600-76202800	Weak transcription	K562	blood
41	chr11:76191600-76204000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:76191600-76204200	Weak transcription	NHLF	lung
43	chr11:76191600-76204400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr11:76191600-76204600	Weak transcription	A549	lung
45	chr11:76191600-76205000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr11:76191600-76207000	Weak transcription	HSMM	muscle
47	chr11:76191600-76207200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:76191600-76207200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:76191600-76231600	Weak transcription	NHDF-Ad	bronchial
50	chr11:76191800-76202400	Weak transcription	Esophagus	oesophagus

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