Variant report

Variant	rs6593432
Chromosome Location	chr10:45147286-45147287
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12572829	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57453691	1.00[ASN][1000 genomes]
rs6593433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075334	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7085548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096221	1.00[EUR][1000 genomes]
rs7923161	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45143000-45147400	Enhancers	Brain Germinal Matrix	brain
2	chr10:45143000-45147600	Enhancers	Ovary	ovary
3	chr10:45143000-45148000	Enhancers	Fetal Muscle Trunk	muscle
4	chr10:45145200-45147400	Enhancers	Fetal Stomach	stomach
5	chr10:45145200-45147600	Enhancers	Fetal Muscle Leg	muscle
6	chr10:45145400-45147600	Enhancers	Fetal Lung	lung
7	chr10:45146000-45147600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr10:45146000-45147600	Enhancers	Adipose Nuclei	Adipose
9	chr10:45146000-45147600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr10:45146200-45147400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:45146200-45147800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:45146200-45148000	Enhancers	Osteobl	bone
13	chr10:45146400-45147400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:45146400-45147400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:45146400-45147400	Enhancers	NH-A	brain
16	chr10:45146400-45147600	Enhancers	Fetal Brain Female	brain
17	chr10:45146400-45147800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr10:45146600-45147400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:45146600-45147400	Enhancers	Brain Anterior Caudate	brain
20	chr10:45146600-45147400	Enhancers	Psoas Muscle	Psoas
21	chr10:45146600-45147400	Enhancers	HSMM	muscle
22	chr10:45146600-45147400	Enhancers	HSMMtube	muscle
23	chr10:45146600-45147400	Flanking Active TSS	NHDF-Ad	bronchial
24	chr10:45146600-45147600	Enhancers	Right Atrium	heart
25	chr10:45146800-45147400	Weak transcription	Pancreas	Pancrea
26	chr10:45147000-45147400	Enhancers	Rectal Smooth Muscle	rectum
27	chr10:45147000-45147400	Enhancers	NHLF	lung
28	chr10:45147000-45148000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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