Variant report

Variant	rs7089581
Chromosome Location	chr10:45146310-45146311
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12572829	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57453691	1.00[ASN][1000 genomes]
rs6593432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075334	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7085548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096221	1.00[EUR][1000 genomes]
rs7923161	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45143000-45147400	Enhancers	Brain Germinal Matrix	brain
2	chr10:45143000-45147600	Enhancers	Ovary	ovary
3	chr10:45143000-45148000	Enhancers	Fetal Muscle Trunk	muscle
4	chr10:45143400-45146400	Weak transcription	Fetal Brain Female	brain
5	chr10:45144000-45146400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:45144200-45146400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:45144200-45146600	Weak transcription	Pancreas	Pancrea
8	chr10:45145000-45146600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:45145200-45146800	Enhancers	Fetal Brain Male	brain
10	chr10:45145200-45147400	Enhancers	Fetal Stomach	stomach
11	chr10:45145200-45147600	Enhancers	Fetal Muscle Leg	muscle
12	chr10:45145400-45147600	Enhancers	Fetal Lung	lung
13	chr10:45145600-45146600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:45145600-45146600	Enhancers	NHDF-Ad	bronchial
15	chr10:45146000-45146800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:45146000-45146800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:45146000-45147000	Enhancers	Colon Smooth Muscle	Colon
18	chr10:45146000-45147600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:45146000-45147600	Enhancers	Adipose Nuclei	Adipose
20	chr10:45146000-45147600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:45146200-45146800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:45146200-45146800	Enhancers	Fetal Kidney	kidney
23	chr10:45146200-45146800	Enhancers	Left Ventricle	heart
24	chr10:45146200-45147000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:45146200-45147400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr10:45146200-45147800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:45146200-45148000	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links