Variant report

Variant	rs7075334
Chromosome Location	chr10:45143579-45143580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12572829	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57453691	0.99[ASN][1000 genomes]
rs6593432	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6593433	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7085548	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7089581	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7096221	1.00[EUR][1000 genomes]
rs7923161	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422287	chr10:45044161-45257684	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831843	chr10:45084703-45280032	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45142600-45144200	Enhancers	Pancreas	Pancrea
2	chr10:45142600-45145000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:45143000-45144000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:45143000-45144000	Enhancers	Fetal Stomach	stomach
5	chr10:45143000-45144400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:45143000-45144400	Enhancers	NHDF-Ad	bronchial
7	chr10:45143000-45144600	Enhancers	Dnd41	blood
8	chr10:45143000-45147400	Enhancers	Brain Germinal Matrix	brain
9	chr10:45143000-45147600	Enhancers	Ovary	ovary
10	chr10:45143000-45148000	Enhancers	Fetal Muscle Trunk	muscle
11	chr10:45143200-45143600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:45143200-45144200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:45143200-45144200	Enhancers	Fetal Lung	lung
14	chr10:45143200-45144400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:45143200-45144400	Enhancers	Fetal Muscle Leg	muscle
16	chr10:45143200-45144600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:45143400-45146400	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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