Variant report

Variant	rs6594317
Chromosome Location	chr5:107877304-107877305
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10064062	0.82[EUR][1000 genomes]
rs10074177	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10078006	0.84[EUR][1000 genomes]
rs10477908	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12719092	0.83[EUR][1000 genomes]
rs13185841	0.83[EUR][1000 genomes]
rs13188482	0.82[EUR][1000 genomes]
rs4957767	0.82[EUR][1000 genomes]
rs6421825	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6594315	0.81[EUR][1000 genomes]
rs7444183	0.85[EUR][1000 genomes]
rs7446237	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7446553	0.84[EUR][1000 genomes]
rs7447596	0.87[ASN][1000 genomes]
rs7728461	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9326730	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:107872000-107884800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:107873600-107878800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107873600-107883200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:107874600-107879200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:107874800-107880000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:107874800-107880200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:107874800-107883600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:107875000-107878600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:107875000-107883600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:107875200-107878600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:107875200-107883400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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