Variant report

Variant	rs7446237
Chromosome Location	chr5:107867558-107867559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10064062	0.89[EUR][1000 genomes]
rs10074177	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10078006	0.90[EUR][1000 genomes]
rs10477908	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12719092	0.80[EUR][1000 genomes]
rs13185841	0.80[EUR][1000 genomes]
rs13188482	0.89[EUR][1000 genomes]
rs4957767	0.89[EUR][1000 genomes]
rs6421825	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6594315	0.88[EUR][1000 genomes]
rs6594317	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6866131	0.82[ASN][1000 genomes]
rs7444183	0.92[EUR][1000 genomes]
rs7446553	0.90[EUR][1000 genomes]
rs7447596	0.87[ASN][1000 genomes]
rs7728461	0.98[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9326730	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7446237	CAMK4	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:107863400-107873400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:107866000-107869200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:107866200-107868600	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr5:107866600-107868600	Enhancers	Fetal Intestine Large	intestine
6	chr5:107866600-107869600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:107866600-107869600	Enhancers	K562	blood
8	chr5:107866800-107867600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:107866800-107868000	Enhancers	HepG2	liver
10	chr5:107867000-107867600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:107867000-107867600	Enhancers	Fetal Stomach	stomach
12	chr5:107867000-107867600	Enhancers	Left Ventricle	heart
13	chr5:107867000-107867800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr5:107867000-107868000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr5:107867200-107867600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:107867200-107867600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:107867200-107867600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:107867200-107867800	Enhancers	Right Atrium	heart
19	chr5:107867200-107868000	Enhancers	Fetal Heart	heart
20	chr5:107867200-107868000	Enhancers	Right Ventricle	heart
21	chr5:107867200-107868000	Enhancers	Stomach Mucosa	stomach
22	chr5:107867400-107867600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:107867400-107867600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links