Variant report

Variant	rs7728461
Chromosome Location	chr5:107881274-107881275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10074177	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10477908	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12719092	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13185841	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6421825	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6594317	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7446237	0.98[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7446919	0.80[ASN][1000 genomes]
rs7728042	0.81[ASN][1000 genomes]
rs7729503	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv882690	chr5:107834247-107954485	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107857400-107890800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:107872000-107884800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:107873600-107883200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:107874800-107883600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:107875000-107883600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:107875200-107883400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:107880200-107885000	Enhancers	Fetal Stomach	stomach
8	chr5:107880400-107889600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:107880600-107883800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:107881000-107881400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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