Variant report

Variant	rs6601417
Chromosome Location	chr8:9989811-9989812
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9985280..9987758-chr8:9989379..9992085,2	K562	blood:
2	chr8:9989052..9991739-chr8:9991879..9993683,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10098474	0.81[CHB][hapmap]
rs10104911	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs11990610	0.87[CHB][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs11990614	0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs11998591	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[ASN][1000 genomes]
rs12114195	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12115063	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12545469	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs12550244	0.82[CHB][hapmap]
rs1484638	0.87[ASN][1000 genomes]
rs17149332	0.91[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs17151108	0.86[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17151140	0.85[CEU][hapmap];0.96[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17151145	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17151147	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17151188	0.89[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17151193	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[ASN][1000 genomes]
rs1984863	0.84[CHB][hapmap]
rs1994223	0.91[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs1994224	0.91[CHB][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs2046398	0.91[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs28653100	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4294187	0.82[CHB][hapmap]
rs4840463	0.86[CHB][hapmap]
rs4840464	0.87[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs4841280	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs57105322	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58764043	0.85[ASN][1000 genomes]
rs62488697	0.81[ASN][1000 genomes]
rs62488709	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62488714	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6985791	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs7843906	0.84[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9329214	0.82[CHB][hapmap];1.00[YRI][hapmap]
rs936749	0.81[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs963593	0.85[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9644681	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1034343	chr8:9948342-10014155	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9970600-9995800	Weak transcription	Pancreas	Pancrea
2	chr8:9984600-9990800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:9986200-10002200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:9986800-9990200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:9987200-9992000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:9987200-9995800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:9987600-9990000	Enhancers	Fetal Brain Male	brain
8	chr8:9987800-9990200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:9988000-9990600	Enhancers	Fetal Intestine Large	intestine
10	chr8:9988200-9990000	Enhancers	Fetal Intestine Small	intestine
11	chr8:9988800-9991000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr8:9988800-9991800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:9988800-9991800	Weak transcription	Fetal Brain Female	brain
14	chr8:9988800-9992000	Weak transcription	Brain Germinal Matrix	brain
15	chr8:9988800-9996200	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:9988800-10002200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:9989000-9990000	Weak transcription	Liver	Liver
18	chr8:9989000-9991800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:9989000-9992400	Weak transcription	Brain Substantia Nigra	brain
20	chr8:9989000-9995000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:9989000-9995200	Weak transcription	Brain Angular Gyrus	brain
22	chr8:9989000-10000400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr8:9989600-9990200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:9989800-9990200	Enhancers	Brain Anterior Caudate	brain

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