Variant report

Variant	rs66473812
Chromosome Location	chr15:74242383-74242384
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74238556..74240155-chr15:74240759..74243694,2	MCF-7	breast:
2	chr15:74217257..74219175-chr15:74242259..74244802,2	MCF-7	breast:
3	chr15:74234337..74237104-chr15:74240874..74243639,2	MCF-7	breast:
4	chr15:74220838..74222691-chr15:74242303..74245094,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261801	Chromatin interaction
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1992314	0.87[AFR][1000 genomes]
rs2304722	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28758267	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4886785	0.84[AFR][1000 genomes]
rs66481504	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66497556	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67173550	0.90[AFR][1000 genomes]
rs67182653	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72745365	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72745372	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs893818	0.90[AFR][1000 genomes]
rs893821	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74222600-74243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:74228800-74243200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:74229000-74243000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:74231800-74242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:74232600-74243000	Weak transcription	Brain Hippocampus Middle	brain
6	chr15:74232800-74244000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:74233400-74243000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:74233600-74243200	Weak transcription	Colonic Mucosa	Colon
9	chr15:74233800-74243800	Weak transcription	Stomach Mucosa	stomach
10	chr15:74234600-74243200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:74234800-74249400	Weak transcription	Primary T cells from cord blood	blood
12	chr15:74235200-74243400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:74235400-74243400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr15:74236400-74243000	Weak transcription	Brain Germinal Matrix	brain
15	chr15:74237000-74242400	Strong transcription	NH-A	brain
16	chr15:74237000-74242600	Strong transcription	NHLF	lung
17	chr15:74237000-74242800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:74237000-74242800	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr15:74237000-74243200	Weak transcription	Right Atrium	heart
20	chr15:74237000-74243400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:74237000-74243800	Weak transcription	Fetal Intestine Large	intestine
22	chr15:74237200-74242800	Weak transcription	Esophagus	oesophagus
23	chr15:74237200-74243400	Weak transcription	Brain Substantia Nigra	brain
24	chr15:74237200-74247800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:74237400-74242800	Strong transcription	Fetal Lung	lung
26	chr15:74237600-74242400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:74237600-74242400	Weak transcription	Fetal Brain Male	brain
28	chr15:74237600-74242800	Weak transcription	Fetal Brain Female	brain
29	chr15:74237600-74243000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:74237600-74243000	Weak transcription	Brain Angular Gyrus	brain
31	chr15:74237600-74243200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:74237600-74243200	Weak transcription	Primary B cells from cord blood	blood
33	chr15:74237800-74242600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:74237800-74242800	Strong transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:74237800-74243000	Weak transcription	Spleen	Spleen
36	chr15:74237800-74243400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:74238000-74243000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:74238000-74243000	Strong transcription	Fetal Stomach	stomach
39	chr15:74238000-74243800	Weak transcription	Fetal Kidney	kidney
40	chr15:74238600-74243000	Strong transcription	Fetal Muscle Trunk	muscle
41	chr15:74238800-74242400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:74238800-74242400	Strong transcription	Aorta	Aorta
43	chr15:74238800-74243000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr15:74239000-74242800	Strong transcription	Stomach Smooth Muscle	stomach
45	chr15:74239000-74242800	Strong transcription	HSMMtube	muscle
46	chr15:74239000-74243000	Strong transcription	Fetal Muscle Leg	muscle
47	chr15:74239000-74243200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:74239000-74243600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr15:74239200-74242400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:74239200-74242800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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