Variant report

Variant	rs66497556
Chromosome Location	chr15:74231733-74231734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74165797..74168180-chr15:74231250..74232878,2	MCF-7	breast:
2	chr15:74231523..74233258-chr15:74237856..74239596,2	MCF-7	breast:
3	chr15:74231331..74232913-chr15:74233031..74235989,2	K562	blood:
4	chr15:74231490..74233026-chr15:74235513..74237845,2	MCF-7	breast:
5	chr15:74212371..74214776-chr15:74230119..74231737,2	K562	blood:

Variant related genes	Relation type
ENSG00000167139	Chromatin interaction
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12906558	0.81[EUR][1000 genomes]
rs1530169	0.81[EUR][1000 genomes]
rs2304722	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28758267	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66473812	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66481504	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67182653	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7163406	0.81[EUR][1000 genomes]
rs72745365	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72745372	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs893821	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74221800-74231800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:74222400-74233200	Weak transcription	Fetal Thymus	thymus
3	chr15:74222600-74243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:74227600-74233000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:74227600-74236600	Weak transcription	Thymus	Thymus
6	chr15:74227800-74233800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:74228200-74232800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:74228400-74232800	Weak transcription	Gastric	stomach
9	chr15:74228400-74239600	Weak transcription	Pancreas	Pancrea
10	chr15:74228600-74233200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:74228600-74233400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:74228800-74232800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:74228800-74243200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:74229000-74232800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:74229000-74232800	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:74229000-74233400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:74229000-74236600	Weak transcription	Brain Substantia Nigra	brain
18	chr15:74229000-74243000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:74229200-74231800	Weak transcription	Fetal Heart	heart
20	chr15:74229200-74232800	Weak transcription	Adipose Nuclei	Adipose
21	chr15:74229200-74232800	Weak transcription	Fetal Muscle Leg	muscle
22	chr15:74229200-74232800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr15:74229200-74233000	Weak transcription	Fetal Intestine Small	intestine
24	chr15:74229200-74236400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:74229200-74236800	Weak transcription	Esophagus	oesophagus
26	chr15:74229200-74241000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr15:74229400-74232400	Weak transcription	Fetal Kidney	kidney
28	chr15:74229400-74233000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:74229400-74233000	Weak transcription	Stomach Mucosa	stomach
30	chr15:74229400-74233200	Weak transcription	NHEK	skin
31	chr15:74229600-74232400	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:74229600-74233000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:74229600-74233200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:74229600-74233200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:74229600-74233200	Weak transcription	HMEC	breast
36	chr15:74229600-74237000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:74229800-74233000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr15:74230000-74232200	Weak transcription	Spleen	Spleen
39	chr15:74230000-74232800	Weak transcription	Ovary	ovary
40	chr15:74230000-74234000	Weak transcription	Lung	lung
41	chr15:74230000-74236400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:74230000-74236600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:74230000-74239200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:74230200-74236400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:74230400-74234200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:74230800-74233800	Genic enhancers	Stomach Smooth Muscle	stomach
47	chr15:74231000-74232400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:74231000-74232800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:74231200-74231800	Strong transcription	HSMMtube	muscle
50	chr15:74231200-74232200	Genic enhancers	NHDF-Ad	bronchial

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