Variant report

Variant	rs67182653
Chromosome Location	chr15:74239307-74239308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74239209-74239508	U87	brain:	n/a	n/a
2	POLR2A	chr15:74217872-74240199	U87	brain:	n/a	n/a
3	POLR2A	chr15:74215819-74242527	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74217306..74220336-chr15:74236509..74239961,4	MCF-7	breast:

Variant related genes	Relation type
LOXL1	TF binding region
ENSG00000261801	Chromatin interaction
ENSG00000129038	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1048661	0.81[AFR][1000 genomes]
rs2028387	0.87[AFR][1000 genomes]
rs2304722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28758267	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4886776	0.87[AFR][1000 genomes]
rs58270968	0.87[AFR][1000 genomes]
rs66473812	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66481504	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66497556	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72745365	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72745372	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs893816	0.86[AFR][1000 genomes]
rs893821	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74222600-74243200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:74228400-74239600	Weak transcription	Pancreas	Pancrea
3	chr15:74228800-74243200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:74229000-74243000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:74229200-74241000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:74231800-74242800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:74232600-74239400	Weak transcription	Brain Anterior Caudate	brain
8	chr15:74232600-74243000	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:74232800-74244000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:74233400-74240200	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:74233400-74243000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:74233600-74243200	Weak transcription	Colonic Mucosa	Colon
13	chr15:74233800-74243800	Weak transcription	Stomach Mucosa	stomach
14	chr15:74234200-74240000	Enhancers	Fetal Thymus	thymus
15	chr15:74234600-74243200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:74234800-74249400	Weak transcription	Primary T cells from cord blood	blood
17	chr15:74235200-74239800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:74235200-74243400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:74235400-74243400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr15:74236400-74239400	Enhancers	Primary hematopoietic stem cells	blood
21	chr15:74236400-74239400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:74236400-74243000	Weak transcription	Brain Germinal Matrix	brain
23	chr15:74236600-74239600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:74236600-74240200	Enhancers	Thymus	Thymus
25	chr15:74236800-74241800	Strong transcription	Osteobl	bone
26	chr15:74237000-74241000	Weak transcription	Left Ventricle	heart
27	chr15:74237000-74242400	Strong transcription	NH-A	brain
28	chr15:74237000-74242600	Strong transcription	NHLF	lung
29	chr15:74237000-74242800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:74237000-74242800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr15:74237000-74243200	Weak transcription	Right Atrium	heart
32	chr15:74237000-74243400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:74237000-74243800	Weak transcription	Fetal Intestine Large	intestine
34	chr15:74237200-74242200	Strong transcription	NHDF-Ad	bronchial
35	chr15:74237200-74242800	Weak transcription	Esophagus	oesophagus
36	chr15:74237200-74243400	Weak transcription	Brain Substantia Nigra	brain
37	chr15:74237200-74247800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr15:74237400-74241400	Weak transcription	Fetal Intestine Small	intestine
39	chr15:74237400-74242200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:74237400-74242800	Strong transcription	Fetal Lung	lung
41	chr15:74237600-74239400	Weak transcription	Ovary	ovary
42	chr15:74237600-74241200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:74237600-74241800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:74237600-74242400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:74237600-74242400	Weak transcription	Fetal Brain Male	brain
46	chr15:74237600-74242800	Weak transcription	Fetal Brain Female	brain
47	chr15:74237600-74243000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr15:74237600-74243000	Weak transcription	Brain Angular Gyrus	brain
49	chr15:74237600-74243200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr15:74237600-74243200	Weak transcription	Primary B cells from cord blood	blood

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