Variant report

Variant	rs66477973
Chromosome Location	chr7:147283521-147283522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1013872	0.86[EUR][1000 genomes]
rs10243945	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12535793	0.83[ASN][1000 genomes]
rs13438099	0.86[EUR][1000 genomes]
rs34920436	0.99[ASN][1000 genomes]
rs35867680	0.86[EUR][1000 genomes]
rs67284428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv19066	chr7:147271448-147285044	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv1824789	chr7:147277640-147294703	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv608961	chr7:147281796-147284351	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
5	nsv608962	chr7:147281796-147284352	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv20953	chr7:147282459-147285145	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	nsv608963	chr7:147283270-147284351	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv1807445	chr7:147283270-147284989	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147268000-147283800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147278400-147283800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:147281000-147284400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:147281400-147284800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr7:147281400-147284800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:147281600-147284600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:147282200-147283600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:147282200-147283600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:147282800-147284600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:147283000-147283800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:147283000-147284400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:147283000-147284800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr7:147283200-147283800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr7:147283200-147284000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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