Variant report

Variant	rs35867680
Chromosome Location	chr7:147299842-147299843
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1013872	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10243945	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10952702	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535793	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12671911	0.81[ASN][1000 genomes]
rs12673115	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13438099	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66477973	0.86[EUR][1000 genomes]
rs67284428	0.86[EUR][1000 genomes]
rs73164356	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147297400-147301600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:147298000-147307600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:147298400-147301600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:147299200-147301600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:147299200-147301600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:147299200-147302000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:147299400-147301800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:147299400-147302000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:147299400-147302200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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