Variant report

Variant	rs10952702
Chromosome Location	chr7:147302751-147302752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1013872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10243945	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12535793	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12667599	0.85[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap]
rs12668061	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs12671911	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12673115	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12703951	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs13438099	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35867680	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164356	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs988040	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147298000-147307600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:147301600-147302800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:147301600-147303000	Enhancers	H9 Cell Line	embryonic stem cell
4	chr7:147301600-147304400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:147302000-147305400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:147302400-147302800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr7:147302400-147302800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:147302400-147303200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:147302400-147303200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr7:147302600-147302800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
11	chr7:147302600-147302800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr7:147302600-147303000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr7:147302600-147303200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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