Variant report

Variant	rs988040
Chromosome Location	chr7:147311099-147311100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1013872	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10952702	0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12667599	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12668061	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12671911	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12673115	0.81[ASN][1000 genomes]
rs12703951	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs13438099	0.81[ASN][1000 genomes]
rs35867680	0.82[ASN][1000 genomes]
rs73164356	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links