Variant report

Variant	rs10243945
Chromosome Location	chr7:147285625-147285626
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1013872	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10952702	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12535793	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12673115	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13438099	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34920436	0.83[ASN][1000 genomes]
rs35867680	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66477973	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67284428	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73164356	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931005	chr7:146730472-147381257	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv1824789	chr7:147277640-147294703	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147284400-147285800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:147284400-147286000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:147284400-147297600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:147284600-147286000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:147284800-147285800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:147284800-147285800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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