Variant report

Variant	rs66481867
Chromosome Location	chr13:54088326-54088327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17636906	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1887759	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927846	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67856164	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9527093	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9536446	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9536450	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536451	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54086600-54088800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr13:54086800-54088400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr13:54087000-54088400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:54087000-54088600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:54087000-54088800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:54087000-54088800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:54087400-54088800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr13:54087800-54088600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr13:54087800-54088600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:54088000-54088600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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