Variant report

Variant	rs9536446
Chromosome Location	chr13:54085295-54085296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17636906	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1887759	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1927846	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66481867	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67856164	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9527093	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9536450	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9536451	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9591508	1.00[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9536446	LPAR6	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54082400-54086600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:54082400-54087000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:54082600-54086600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:54082600-54086800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:54082600-54087000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:54082600-54087000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr13:54082600-54087000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr13:54082600-54087400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr13:54082600-54087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:54082800-54086800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr13:54082800-54087000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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