Variant report

Variant	rs66523873
Chromosome Location	chr14:81005725-81005726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12432505	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12434618	0.87[AMR][1000 genomes]
rs12435900	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12437092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110752	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17110796	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17110799	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17110803	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17530332	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56341421	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80978600-81006600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:81002000-81010000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:81002400-81009600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:81003400-81015600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:81004600-81005800	Flanking Active TSS	A549	lung
6	chr14:81005600-81005800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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