Variant report

Variant	rs56341421
Chromosome Location	chr14:81036840-81036841
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81030392..81031930-chr14:81036761..81039029,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12432505	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12434405	0.82[AMR][1000 genomes]
rs12435900	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12437092	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17110796	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17110799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17110803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17110815	0.83[ASN][1000 genomes]
rs17110880	0.94[AFR][1000 genomes]
rs17530332	0.82[EUR][1000 genomes]
rs2122429	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58877537	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs66523873	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7160951	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs72689053	0.86[AMR][1000 genomes]
rs72689058	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72689070	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72689071	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72689095	0.94[AFR][1000 genomes]
rs8008191	0.84[AFR][1000 genomes]
rs8017017	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8017133	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs8017609	0.92[AFR][1000 genomes]
rs8017722	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81029600-81044800	Weak transcription	Dnd41	blood
2	chr14:81032400-81040400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr14:81034800-81037000	Enhancers	NHEK	skin
4	chr14:81035000-81037200	Enhancers	HMEC	breast
5	chr14:81035000-81042000	Weak transcription	A549	lung
6	chr14:81035200-81040200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr14:81036000-81037200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:81036800-81037000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:81036800-81037200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:81036800-81037200	Enhancers	NHDF-Ad	bronchial

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