Variant report

Variant	rs17110880
Chromosome Location	chr14:81093712-81093713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10498546	0.82[JPT][hapmap]
rs12432896	0.85[EUR][1000 genomes]
rs12434405	0.92[CEU][hapmap];0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12434618	0.83[CEU][hapmap]
rs12435900	0.94[AFR][1000 genomes]
rs17110752	0.83[CEU][hapmap]
rs17110796	0.85[AFR][1000 genomes]
rs17110799	0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17110803	0.94[AFR][1000 genomes]
rs17110815	0.80[JPT][hapmap]
rs1871457	0.92[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs2122429	1.00[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2596115	0.82[JPT][hapmap]
rs2619671	0.90[JPT][hapmap];0.86[AMR][1000 genomes]
rs56341421	0.94[AFR][1000 genomes]
rs58877537	0.85[EUR][1000 genomes]
rs7153490	0.90[JPT][hapmap];0.86[AMR][1000 genomes]
rs7160951	1.00[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72689053	0.81[EUR][1000 genomes]
rs72689058	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72689070	0.98[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72689071	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs72689095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008191	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8013010	0.80[CEU][hapmap]
rs8017017	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8017133	1.00[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8017609	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8017722	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8022733	0.92[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81087400-81104200	Weak transcription	HSMM	muscle
3	chr14:81088600-81094200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:81088600-81099400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:81093200-81093800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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