Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10498546	0.84[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs12432505	0.84[GIH][hapmap]
rs12432896	0.90[EUR][1000 genomes]
rs12434405	0.94[GIH][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs12437092	0.84[GIH][hapmap]
rs17110752	0.80[GIH][hapmap]
rs17110796	0.84[GIH][hapmap]
rs17110799	0.81[GIH][hapmap];0.90[JPT][hapmap]
rs17110815	0.80[JPT][hapmap]
rs17110880	0.92[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs2122429	0.85[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs2596115	0.92[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2619671	1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap]
rs7153490	1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7160951	0.85[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs72689071	0.84[EUR][1000 genomes]
rs72689095	0.88[EUR][1000 genomes]
rs8008191	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8017017	0.85[EUR][1000 genomes]
rs8017133	0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs8017609	0.86[EUR][1000 genomes]
rs8017722	0.85[EUR][1000 genomes]
rs8022733	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1039554	chr14:81113167-81156335	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv1051964	chr14:81113167-81156847	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1871457	C14orf145	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81106200-81135400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:81108200-81145800	Weak transcription	Fetal Thymus	thymus
3	chr14:81108600-81116800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr14:81110600-81124600	Weak transcription	Dnd41	blood
5	chr14:81110800-81124400	Weak transcription	Brain Substantia Nigra	brain

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