Variant report

Variant	rs2619671
Chromosome Location	chr14:81100158-81100159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10498546	0.84[CHB][hapmap]
rs12434618	0.91[CEU][hapmap]
rs17110752	0.91[CEU][hapmap];1.00[MEX][hapmap]
rs17110799	0.81[JPT][hapmap]
rs17110815	1.00[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs17110880	0.90[JPT][hapmap];0.86[AMR][1000 genomes]
rs1871457	1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap]
rs2122429	0.81[JPT][hapmap]
rs2596115	0.92[CHB][hapmap]
rs7153490	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7160951	0.81[JPT][hapmap]
rs72689095	0.86[AMR][1000 genomes]
rs8008191	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8013010	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs8017133	0.81[JPT][hapmap]
rs8017609	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2619671	C14orf145	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81087400-81104200	Weak transcription	HSMM	muscle
3	chr14:81099000-81106200	Weak transcription	Psoas Muscle	Psoas
4	chr14:81099000-81109600	Weak transcription	Thymus	Thymus
5	chr14:81099400-81100600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:81099800-81100400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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