Variant report

Variant	rs12437092
Chromosome Location	chr14:81005140-81005141
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12432505	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12434405	0.89[GIH][hapmap]
rs12434618	1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs12435900	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17110752	0.91[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17110796	1.00[CEU][hapmap];0.94[GIH][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17110799	0.93[CEU][hapmap];0.91[GIH][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17110803	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17530332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1871457	0.84[GIH][hapmap]
rs56341421	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs66523873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022733	0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12437092	C14orf145	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80978600-81006600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr14:80997800-81005400	Weak transcription	Dnd41	blood
3	chr14:81002000-81010000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:81002400-81009600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:81003400-81015600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:81004600-81005800	Flanking Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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