Variant report
| Variant | rs6656776 |
|---|---|
| Chromosome Location | chr1:169418139-169418140 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:169417406..169419368-chr1:169421351..169424110,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs16862089 | 1.00[AMR][1000 genomes] |
| rs16862091 | 1.00[AMR][1000 genomes] |
| rs16862101 | 1.00[AMR][1000 genomes] |
| rs57339033 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57556667 | 1.00[AMR][1000 genomes] |
| rs58003088 | 1.00[AMR][1000 genomes] |
| rs58149696 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58775541 | 1.00[AMR][1000 genomes] |
| rs58860567 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6664612 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6687062 | 1.00[AMR][1000 genomes] |
| rs73034687 | 1.00[AMR][1000 genomes] |
| rs73034701 | 1.00[AMR][1000 genomes] |
| rs73035376 | 1.00[AMR][1000 genomes] |
| rs73035381 | 1.00[AMR][1000 genomes] |
| rs73036804 | 1.00[AMR][1000 genomes] |
| rs73036820 | 1.00[AMR][1000 genomes] |
| rs73036830 | 1.00[AMR][1000 genomes] |
| rs73036833 | 1.00[AMR][1000 genomes] |
| rs73036856 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73036860 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73041751 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73041774 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73051105 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73051107 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7417281 | 1.00[AMR][1000 genomes] |
| rs7534851 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv10418 | chr1:169059628-169621268 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 2 | nsv831871 | chr1:169320673-169486680 | Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv1001454 | chr1:169387381-169465274 | Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 4 | nsv1005941 | chr1:169410486-169456393 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:169413400-169418200 | Weak transcription | Stomach Mucosa | stomach |
