Variant report

Variant	rs73036820
Chromosome Location	chr1:169316582-169316583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169079372..169082049-chr1:169315164..169316948,2	MCF-7	breast:
2	chr1:169315275..169317459-chr1:169319904..169321487,2	K562	blood:
3	chr1:169315565..169317290-chr1:169336784..169338618,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143153	Chromatin interaction
ENSG00000143156	Chromatin interaction
ENSG00000117475	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16862089	1.00[AMR][1000 genomes]
rs16862091	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16862101	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57339033	1.00[AMR][1000 genomes]
rs57556667	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58003088	1.00[AMR][1000 genomes]
rs58149696	1.00[AMR][1000 genomes]
rs58775541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58860567	1.00[AMR][1000 genomes]
rs6656776	1.00[AMR][1000 genomes]
rs6664612	1.00[AMR][1000 genomes]
rs6687062	1.00[AMR][1000 genomes]
rs73034687	1.00[AMR][1000 genomes]
rs73034701	1.00[AMR][1000 genomes]
rs73035376	1.00[AMR][1000 genomes]
rs73035381	1.00[AMR][1000 genomes]
rs73036804	1.00[AMR][1000 genomes]
rs73036830	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036833	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036856	1.00[AMR][1000 genomes]
rs73036860	1.00[AMR][1000 genomes]
rs73041751	1.00[AMR][1000 genomes]
rs73041774	1.00[AMR][1000 genomes]
rs73051105	1.00[AMR][1000 genomes]
rs73051107	1.00[AMR][1000 genomes]
rs7417281	1.00[AMR][1000 genomes]
rs7534851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1010010	chr1:169189586-169347545	Active TSS Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv872531	chr1:169191860-169388193	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1012919	chr1:169200982-169324750	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv872532	chr1:169275630-169363203	Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169265000-169320400	Weak transcription	Aorta	Aorta
2	chr1:169270200-169336400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:169296600-169324600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:169303800-169317600	Weak transcription	Liver	Liver
5	chr1:169305600-169336400	Weak transcription	Left Ventricle	heart
6	chr1:169309200-169333600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:169309400-169336400	Weak transcription	Ovary	ovary
8	chr1:169310600-169316800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:169310800-169332800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:169311000-169336400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:169313600-169317000	Enhancers	Fetal Intestine Large	intestine
12	chr1:169314800-169318200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:169316000-169334200	Weak transcription	Fetal Intestine Small	intestine
14	chr1:169316400-169321800	Weak transcription	HUVEC	blood vessel

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