Variant report

Variant	rs73041751
Chromosome Location	chr1:169385083-169385084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16862089	1.00[AMR][1000 genomes]
rs16862091	1.00[AMR][1000 genomes]
rs16862101	1.00[AMR][1000 genomes]
rs57339033	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57556667	1.00[AMR][1000 genomes]
rs58003088	1.00[AMR][1000 genomes]
rs58149696	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58775541	1.00[AMR][1000 genomes]
rs58860567	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6656776	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664612	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687062	1.00[AMR][1000 genomes]
rs73034687	1.00[AMR][1000 genomes]
rs73034701	1.00[AMR][1000 genomes]
rs73035376	1.00[AMR][1000 genomes]
rs73035381	1.00[AMR][1000 genomes]
rs73036804	1.00[AMR][1000 genomes]
rs73036820	1.00[AMR][1000 genomes]
rs73036830	1.00[AMR][1000 genomes]
rs73036833	1.00[AMR][1000 genomes]
rs73036856	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73036860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73041774	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051105	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73051107	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7417281	1.00[AMR][1000 genomes]
rs7534851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv872531	chr1:169191860-169388193	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169360800-169395200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:169382000-169395200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr1:169383600-169395400	Weak transcription	Ovary	ovary
4	chr1:169384800-169389000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:169385000-169389200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:169385000-169395200	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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