Variant report

Variant	rs6657013
Chromosome Location	chr1:221358289-221358290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10779426	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10779428	0.93[ASN][1000 genomes]
rs10863583	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10863590	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11581606	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12026738	0.82[EUR][1000 genomes]
rs1417922	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1442459	0.82[EUR][1000 genomes]
rs1442460	0.82[EUR][1000 genomes]
rs1539138	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2039958	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2226092	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4484929	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6541174	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6693820	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9431425	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873199	chr1:221136672-221451217	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221351800-221360800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr1:221356800-221360400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:221358200-221360400	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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